Retrieve gene annotations using a mixed list of IDs

Retrieves gene annotations across all databases integrated into VEuPathDB, without requiring organism or database information.

Usage

getTableVeupathdb(
  ids,
  customFields = NULL,
  api_key = Sys.getenv("VEUPATHDB_API_KEY")
)

Arguments

ids

Character vector of gene identifiers.

customFields

Optional character vector of attributes. If NULL, default mapping attributes are returned. See getTableAttributes() for available attributes.

api_key

VEuPathDB API key.

Value

A data frame containing the input IDs, matched gene IDs, organism information and requested annotations.

Details

Uses the VEuPathDB GeneByLocusTag search.

Examples

if (FALSE) { # \dontrun{
df <- getTableVeupathdb(
  ids = c("PF3D7_1372300", "PBANKA_1355600","A0A143ZZR8","W7JSP8" )
)
} # }