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plasmoRUtils 1.1.0

Changes in version 1.1.0

  • searchGSC function can now fetch articles for custom years of interest. Title translation to desired language provided. Users can choose how many pages to parse to match number of articles returned upon manual query in Google scholar.
  • searchHP : Taxon id is not mandatory but desired to avoid fetching interactions from other organisms having same gene name.
  • Help sections of functions improved.
  • New functions: getpairedOrthologs , listOrthomcl, listipdb to get paired orthologs from OrthoMCL 7 and InParanoiDB.
  • Functions removed: searchMT and easyPie were removed due to repeated failure given the database latency.
  • searchApicoTFdb now fetches more specialised tables from the database. searchIpDb is not Plasmodium specific and can accept uniprot IDs of other organisms provided by InParanoiDB.
  • searchPhPl was unable to fetch phenotypes for some genes. This has been fixed.

Changes in version 1.0.0

  • First stable release.

Changes in version 0.99.1

  • Vignettes created.

Changes in version 0.99.0

  • First version created.