Improved error handling in searchTedConsensus function for marginal cases where uniprot IDs throws 404 error.
Error handling improved in easyAF2Signal for marginal cases like A0A140KXW6.
Deprecation of searchGSC due to compliance issues. This function has now been replaced with searchRS to query Research Square programmatically using its API.
Removed ggpubr, ggsci and glue to slim down package.
New function: getPreconfiguredTableOrthomcl() is a new function to fetch preconfigured tables from OrthoMCL. It can be used to map old OG IDs to new OG IDs, retrive tables of PFam Architecture of Each Protein, Summary of Pfam domains, Summary of EC Numbers etc.
Fixed latency in searchHP by using httr2.
Revised searchPM function by replacing depreciated functions with new functions.
Revised searchPhPl to handle borderline cases.
Changes in version 1.1.0
searchGSC function can now fetch articles for custom years of interest. Title translation to desired language provided. Users can choose how many pages to parse to match number of articles returned upon manual query in Google scholar.
searchHP : Taxon id is not mandatory but desired to avoid fetching interactions from other organisms having same gene name.
Help sections of functions improved.
New functions:getpairedOrthologs , listOrthomcl, listipdb to get paired orthologs from OrthoMCL 7 and InParanoiDB.
Functions removed:searchMT and easyPie were removed due to repeated failure given the database latency.
searchApicoTFdb now fetches more specialised tables from the database. searchIpDb is not Plasmodium specific and can accept uniprot IDs of other organisms provided by InParanoiDB.
searchPhPl was unable to fetch phenotypes for some genes. This has been fixed.
