Quick mapping of PDB IDs to Uiprot IDs

A convenience function to quickly convert the PDB IDs to Uniprot IDs. If a protein is multimeric, corresponding Uniprot IDs are returned for them. This function uses PDBe API.

Usage

pdb2uniprot(pdbid, timeout = 60, max_tries = 3)

Arguments

pdbid

A single PDB Id.

timeout

Timeout time in seconds

max_tries

Maximum retries allowed.

Value

A data frame, Uniprot IDs, Chain IDs and start and end coordinates of the chains.

Examples

if (FALSE) { # \dontrun{
df <- pdb2uniprot("9FIA")
} # }