Making plots similar to malaria.tools

This function retrieves data from malaria.tools and generates expression value plots (in TPM) similar to those produced by the website. Use this function to create publication-ready plots.

Usage

plotStageSpecific(geneID, returnData = FALSE, plotify = FALSE)

Arguments

geneID

Gene ID of Plasmodium falciparum or Plasmodium berghi.

returnData

Logical. Use true to return data frame used for making plots.

plotify

To make plots interactive using plotly.

Value

A plot (or data theirof) of TPM values across multiple stages of parasite.

Examples

if (FALSE) { # \dontrun{
  geneID <- c("PBANKA_0100600", "PBANKA_0102900", "PF3D7_0102900")
  ## To get Plot similar to malaria.tools
  res <- plotTissueSpecific(geneID = "PBANKA_0100600")
} # }