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Fetch data from ApicoTFdb

Source: R/searchApicoTFdb.R
searchApicoTFdb.Rd

This function provides ability to query your gene IDs to ApicoTFDb.

Usage

searchApicoTFdb(org = "pf", fetch = "all")

Arguments

org

Abbreviation of organism of interest.

fetch

Describe the tables to be fetched. Default: "all" will fetch all TFs. To fetch TRs,CRRs,RNA-regs or Experimentally verified TF, use "trs","crrs","rnaregs" and "exptfs" respectively. When using other than "all", org argument will be ignored.

  • pb: Plasmodium berghii

  • pv: Plasmodium vivax

  • pf: Plasmodium falciparum

  • pk: Plasmodium knowlesi

  • py: Plasmodium yoelii

  • pc: Plasmodium chabaudi

  • tg49: Toxoplasma Gondii ME49

  • tg89: Toxoplasma Gondii P89

  • cp: Cryptosporidium parvum

  • em: Eimeria maxima

  • bb: Babesia bovis

  • et: Eimeria tenella

  • nu: Neurospora caninum

  • cy: Cyclospora cayetanensis

Value

df This function returns a dataframe of transcription regulators for organism of interest from ApicoTFDb.

Examples

if (FALSE) { # \dontrun{
test <- searchApicoTFdb(org = "pf")
} # }