Fetch articles from PubMed database — searchPM • plasmoRUtils

This function searches the PubMed corpus for the articles that contains your Gene ID of interest.

Usage

searchPM(
  geneID,
  org = "Plasmodium falciparum",
  query = NULL,
  from = 2010,
  to = 2025,
  verbose = TRUE
)

Arguments

geneID: Character vector of Gene IDs.
org: Scientific name of the organism. Default "Plasmodium falciparum"
query: String of user defined custom queries. If you wish to pass your own combination od terms use this argument.
from: To define the start year for querying the articles.
to: To define the end year for querying the articles.
verbose: Disable to turn off the messages printed by the function.

Value

A data frame, containing 9 columns: "pmid" "doi" "title" "year" "month" "day" "jabbrv" "journal" "GeneID" .

Examples

if (FALSE) { # \dontrun{
test <- searchPM(geneID = c("PF3D7_0420300","PF3D7_0621000"))
} # }