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Fetch data tables from PhenoPlasm database

Source: R/searchPhPl.R
searchPhPl.Rd

This function searches the Phenotypes of the gene IDs in Phenoplasm database and enables users to fetch sub-tables such as Disruptability and Mutant phenotypes.

Usage

searchPhPl(geneID = "", org = "pf", fetch = 1)

Arguments

geneID

Character vector of Gene IDs.

org

Abbreviation of the organism. Default "pf"

fetch

Numeric. Use 1 to fetch the "Disruptability" table and 2 to fetch "Mutant phenotypes" table.

  • pb: Plasmodium berghii

  • pk: Plasmodium knowlesi

  • pf: Plasmodium falciparum

  • pc: Plasmodium chabaudi

  • py: Plasmodium yoelii

Value

A data frame.

Examples

if (FALSE) { # \dontrun{
## get phenotype for few genes in plasmodium falciparum
df <- searchPhPl(geneID = c("PF3D7_0420300", "PF3D7_0621000", "PF3D7_0523800"), org = "pf")
df <- searchPhPl(geneID = c("PF3D7_0420300", "PF3D7_0621000", "PF3D7_0523800"), org = "pf", fetch = 2)
} # }