Fetch data tables from PhenoPlasm database

This function searches the Phenotypes of the gene IDs in Phenoplasm database and enables users to fetch sub-tables such as Disruptability and Mutant phenotypes.

Usage

searchPhPl(geneID = "", org = "pf", fetch = 1)

Arguments

geneID

Character vector of Gene IDs.

org

Abbreviation of the organism. Default "pf"

fetch

Numeric. Use 1 to fetch the "Disruptability" table and 2 to fetch "Mutant phenotypes" table. Plasmodium Species: pb: Plasmodium berghii pk: Plasmodium knowlesi pf: Plasmodium falciparum pc: Plasmodium chabaudi py: Plasmodium yoelii

Value

A data frame.

Examples

if (FALSE) { # \dontrun{
## get phenotype for few genes in plasmodium falciparum
df <- searchPhPl(geneID = c("PF3D7_0420300","PF3D7_0621000","PF3D7_0523800"), org="pf")
df <- searchPhPl(geneID = c("PF3D7_0420300","PF3D7_0621000","PF3D7_0523800"), org="pf", fetch=2)

} # }